How to plot in multiple subplots

Read the documentation: matplotlib.pyplot.subplots

pyplot.subplots() returns a tuple fig, ax which is unpacked in two variables using the notation

fig, axes = plt.subplots(nrows=2, ncols=2)

The code:

fig = plt.figure()
axes = fig.subplots(nrows=2, ncols=2)

does not work because subplots() is a function in pyplot not a member of the object Figure.

You might be interested in the fact that as of matplotlib version 2.1 the second code from the question works fine as well.

From the change log:

Figure class now has subplots method
The Figure class now has a subplots() method which behaves the same as pyplot.subplots() but on an existing figure.

Example:

import matplotlib.pyplot as plt

fig = plt.figure()
axes = fig.subplots(nrows=2, ncols=2)

plt.show()

import matplotlib.pyplot as plt

fig, ax = plt.subplots(2, 2)

ax[0, 0].plot(range(10), 'r') #row=0, col=0
ax[1, 0].plot(range(10), 'b') #row=1, col=0
ax[0, 1].plot(range(10), 'g') #row=0, col=1
ax[1, 1].plot(range(10), 'k') #row=1, col=1
plt.show()

• You can also unpack the axes in the subplots call

• And set whether you want to share the x and y axes between the subplots

Like this:

import matplotlib.pyplot as plt
# fig, ((ax1, ax2), (ax3, ax4)) = plt.subplots(nrows=2, ncols=2, sharex=True, sharey=True)
fig, axes = plt.subplots(nrows=2, ncols=2, sharex=True, sharey=True)
ax1, ax2, ax3, ax4 = axes.flatten()

ax1.plot(range(10), 'r')
ax2.plot(range(10), 'b')
ax3.plot(range(10), 'g')
ax4.plot(range(10), 'k')
plt.show()

Go with the following if you really want to use a loop:

def plot(data):
    fig = plt.figure(figsize=(100, 100))
    for idx, k in enumerate(data.keys(), 1):
        x, y = data[k].keys(), data[k].values
        plt.subplot(63, 10, idx)
        plt.bar(x, y)  
    plt.show()

Iterating through all subplots sequentially:

fig, axes = plt.subplots(nrows, ncols)

for ax in axes.flatten():
    ax.plot(x,y)

Accessing a specific index:

for row in range(nrows):
    for col in range(ncols):
        axes[row,col].plot(x[row], y[col])

You could use the following:

import numpy as np
import matplotlib.pyplot as plt

fig, _ = plt.subplots(nrows=2, ncols=2)

for i, ax in enumerate(fig.axes):
  ax.plot(np.sin(np.linspace(0,2*np.pi,100) + np.pi/2*i))

Or alternatively, using the second variable that plt.subplot returns:

fig, ax_mat = plt.subplots(nrows=2, ncols=2)
for i, ax in enumerate(ax_mat.flatten()):
    ...

ax_mat is a matrix of the axes. It’s shape is nrows x ncols.

Subplots with pandas

• This answer is for subplots with pandas, which uses matplotlib as the default plotting backend.
• Here are four options to create subplots starting with a pandas.DataFrame
  • Implementation 1. and 2. are for the data in a wide format, creating subplots for each column.
  • Implementation 3. and 4. are for data in a long format, creating subplots for each unique value in a column.
• Tested in python 3.8.11, pandas 1.3.2, matplotlib 3.4.3, seaborn 0.11.2

Imports and Data

import seaborn as sns  # data only
import pandas as pd
import matplotlib.pyplot as plt
import seaborn as sns

# wide dataframe
df = sns.load_dataset('planets').iloc[:, 2:5]

   orbital_period   mass  distance
0         269.300   7.10     77.40
1         874.774   2.21     56.95
2         763.000   2.60     19.84
3         326.030  19.40    110.62
4         516.220  10.50    119.47

# long dataframe
dfm = sns.load_dataset('planets').iloc[:, 2:5].melt()

         variable    value
0  orbital_period  269.300
1  orbital_period  874.774
2  orbital_period  763.000
3  orbital_period  326.030
4  orbital_period  516.220

1. subplots=True and layout, for each column

• Use the parameters subplots=True and layout=(rows, cols) in pandas.DataFrame.plot
• This example uses kind='density', but there are different options for kind, and this applies to them all. Without specifying kind, a line plot is the default.
• ax is array of AxesSubplot returned by pandas.DataFrame.plot
• See How to get a Figure object, if needed.
  • How to save pandas subplots

axes = df.plot(kind='density', subplots=True, layout=(2, 2), sharex=False, figsize=(10, 6))

# extract the figure object; only used for tight_layout in this example
fig = axes[0][0].get_figure() 

# set the individual titles
for ax, title in zip(axes.ravel(), df.columns):
    ax.set_title(title)
fig.tight_layout()
plt.show()

2. plt.subplots, for each column

• Create an array of Axes with matplotlib.pyplot.subplots and then pass axes[i, j] or axes[n] to the ax parameter.
  • This option uses pandas.DataFrame.plot, but can use other axes level plot calls as a substitute (e.g. sns.kdeplot, plt.plot, etc.)
  • It’s easiest to collapse the subplot array of Axes into one dimension with .ravel or .flatten. See .ravel vs .flatten.
  • Any variables applying to each axes, that need to be iterate through, are combined with .zip (e.g. cols, axes, colors, palette, etc.). Each object must be the same length.

fig, axes = plt.subplots(nrows=2, ncols=2, figsize=(10, 6))  # define the figure and subplots
axes = axes.ravel()  # array to 1D
cols = df.columns  # create a list of dataframe columns to use
colors = ['tab:blue', 'tab:orange', 'tab:green']  # list of colors for each subplot, otherwise all subplots will be one color

for col, color, ax in zip(cols, colors, axes):
    df[col].plot(kind='density', ax=ax, color=color, label=col, title=col)
    ax.legend()
    
fig.delaxes(axes[3])  # delete the empty subplot
fig.tight_layout()
plt.show()

Result for 1. and 2.

3. plt.subplots, for each group in .groupby

• This is similar to 2., except it zips color and axes to a .groupby object.

fig, axes = plt.subplots(nrows=2, ncols=2, figsize=(10, 6))  # define the figure and subplots
axes = axes.ravel()  # array to 1D
dfg = dfm.groupby('variable')  # get data for each unique value in the first column
colors = ['tab:blue', 'tab:orange', 'tab:green']  # list of colors for each subplot, otherwise all subplots will be one color

for (group, data), color, ax in zip(dfg, colors, axes):
    data.plot(kind='density', ax=ax, color=color, title=group, legend=False)

fig.delaxes(axes[3])  # delete the empty subplot
fig.tight_layout()
plt.show()

4. seaborn figure-level plot

• Use a seaborn figure-level plot, and use the col or row parameter. seaborn is a high-level API for matplotlib. See seaborn: API reference

p = sns.displot(data=dfm, kind='kde', col='variable', col_wrap=2, x='value', hue='variable',
                facet_kws={'sharey': False, 'sharex': False}, height=3.5, aspect=1.75)
sns.move_legend(p, "upper left", bbox_to_anchor=(.55, .45))

Convert the axes array to 1D

• Generating subplots with plt.subplots(nrows, ncols), where both nrows and ncols is greater than 1, returns a nested array of <AxesSubplot:> objects.
  • It’s not necessary to flatten axes in cases where either nrows=1 or ncols=1, because axes will already be 1 dimensional, which is a result of the default parameter squeeze=True
• The easiest way to access the objects, is to convert the array to 1 dimension with .ravel(), .flatten(), or .flat.
  • .ravel vs. .flatten
    • flatten always returns a copy.
    • ravel returns a view of the original array whenever possible.
• Once the array of axes is converted to 1-d, there are a number of ways to plot.
• This answer is relevant to seaborn axes-level plots, which have the ax= parameter (e.g. sns.barplot(…, ax=ax[0]).
  • seaborn is a high-level API for matplotlib. See Figure-level vs. axes-level functions and seaborn is not plotting within defined subplots

import matplotlib.pyplot as plt
import numpy as np  # sample data only

# example of data
rads = np.arange(0, 2*np.pi, 0.01)
y_data = np.array([np.sin(t*rads) for t in range(1, 5)])
x_data = [rads, rads, rads, rads]

# Generate figure and its subplots
fig, axes = plt.subplots(nrows=2, ncols=2)

# axes before
array([[<AxesSubplot:>, <AxesSubplot:>],
       [<AxesSubplot:>, <AxesSubplot:>]], dtype=object)

# convert the array to 1 dimension
axes = axes.ravel()

# axes after
array([<AxesSubplot:>, <AxesSubplot:>, <AxesSubplot:>, <AxesSubplot:>],
      dtype=object)

1. Iterate through the flattened array
   • If there are more subplots than data, this will result in IndexError: list index out of range
     • Try option 3. instead, or select a subset of the axes (e.g. axes[:-2])

for i, ax in enumerate(axes):
    ax.plot(x_data[i], y_data[i])

2. Access each axes by index

axes[0].plot(x_data[0], y_data[0])
axes[1].plot(x_data[1], y_data[1])
axes[2].plot(x_data[2], y_data[2])
axes[3].plot(x_data[3], y_data[3])

3. Index the data and axes

for i in range(len(x_data)):
    axes[i].plot(x_data[i], y_data[i])

4. zip the axes and data together and then iterate through the list of tuples.

for ax, x, y in zip(axes, x_data, y_data):
    ax.plot(x, y)

Ouput

• An option is to assign each axes to a variable, fig, (ax1, ax2, ax3) = plt.subplots(1, 3). However, as written, this only works in cases with either nrows=1 or ncols=1. This is based on the shape of the array returned by plt.subplots, and quickly becomes cumbersome.
  • fig, ((ax1, ax2), (ax3, ax4)) = plt.subplots(2, 2) for a 2 x 2 array.
  • This option is most useful for two subplots (e.g.: fig, (ax1, ax2) = plt.subplots(1, 2) or fig, (ax1, ax2) = plt.subplots(2, 1)). For more subplots, it’s more efficient to flatten and iterate through the array of axes.

here is a simple solution

fig, ax = plt.subplots(nrows=2, ncols=3, sharex=True, sharey=False)
for sp in fig.axes:
    sp.plot(range(10))

Another concise solution is:

// set up structure of plots
f, (ax1, ax2, ax3) = plt.subplots(1, 3, figsize=(20,10))

// for plot 1
ax1.set_title('Title A')
ax1.plot(x, y)

// for plot 2
ax2.set_title('Title B')
ax2.plot(x, y)

// for plot 3
ax3.set_title('Title C')
ax3.plot(x,y)

You can use the method add_subplot in matplotlib. In my opinion, it’s easier than accessing subplots in the axes array:

funcs = [np.cos, np.sin, np.tan, np.arctan, np.exp, np.log]
x = np.linspace(1, 10, 100)

fig = plt.figure(figsize=(10, 5))

# iterate over the function list and add a subplot for each function
for idx, func in enumerate(funcs, start=1):  
    ax = fig.add_subplot(2, 3, idx) # plot with 2 rows and 3 columns
    ax.plot(x, func(x))
    ax.set_title(func.__name__)

# add spacing between subplots
fig.tight_layout()