Latent Dirichlet Allocation with prior topic words

After taking a look a the source and the docs, it seems to me like the easiest thing to do is subclass LatentDirichletAllocation and only override the _init_latent_vars method. It is the method called in fit to create the components_ attribute, which is the matrix used for the decomposition. By re-implementing this method, you can set it just the way you want, and in particular, boost the prior weights for the related topics/features. You would re-implement there the logic of the paper for the initialization.

Using Anis’ help, I created a subclass of the original module, and edited the function that sets the starting values matrix. For all prior topic words you wish to give as input, it transforms the components_ matrix by multiplying the values with the topic values of that (prior) word.

This is the code:

# List with prior topic words as tuples
# (word index, [topic values])
prior_topic_words = []

# Example (word at index 3000 belongs to topic with index 0)
prior_topic_words.append(
    (3000, [(np.finfo(np.float64).max/4),0.,0.,0.,0.])
)

# Custom subclass for PTW-guided LDA
from sklearn.utils import check_random_state
from sklearn.decomposition._online_lda import _dirichlet_expectation_2d
class PTWGuidedLatentDirichletAllocation(LatentDirichletAllocation):

    def __init__(self, n_components=10, doc_topic_prior=None, topic_word_prior=None, learning_method=’batch’, learning_decay=0.7, learning_offset=10.0, max_iter=10, batch_size=128, evaluate_every=-1, total_samples=1000000.0, perp_tol=0.1, mean_change_tol=0.001, max_doc_update_iter=100, n_jobs=None, verbose=0, random_state=None, n_topics=None, ptws=None):
        super(PTWGuidedLatentDirichletAllocation, self).__init__(n_components, doc_topic_prior, topic_word_prior, learning_method, learning_decay, learning_offset, max_iter, batch_size, evaluate_every, total_samples, perp_tol, mean_change_tol, max_doc_update_iter, n_jobs, verbose, random_state, n_topics)
        self.ptws = ptws

    def _init_latent_vars(self, n_features):
        """Initialize latent variables."""

        self.random_state_ = check_random_state(self.random_state)
        self.n_batch_iter_ = 1
        self.n_iter_ = 0

        if self.doc_topic_prior is None:
            self.doc_topic_prior_ = 1. / self.n_topics
        else:
            self.doc_topic_prior_ = self.doc_topic_prior

        if self.topic_word_prior is None:
            self.topic_word_prior_ = 1. / self.n_topics
        else:
            self.topic_word_prior_ = self.topic_word_prior

        init_gamma = 100.
        init_var = 1. / init_gamma
        # In the literature, this is called `lambda`
        self.components_ = self.random_state_.gamma(
            init_gamma, init_var, (self.n_topics, n_features))

        # Transform topic values in matrix for prior topic words
        if self.ptws is not None:
            for ptw in self.ptws:
                word_index = ptw[0]
                word_topic_values = ptw[1]
                self.components_[:, word_index] *= word_topic_values

        # In the literature, this is `exp(E[log(beta)])`
        self.exp_dirichlet_component_ = np.exp(
            _dirichlet_expectation_2d(self.components_))

Initiation is the same as the original LatentDirichletAllocation class, but now you can provide prior topic words using the ptws parameter.

_{This answer was posted as an edit to the question Latent Dirichlet Allocation with prior topic words by the OP Philip under CC BY-SA 3.0.}