Could not install packages due to an EnvironmentError: [Errno 13]

Regarding the permissions command, try using sudo in front of your terminal command:

sudo pip install --upgrade pip

Sudo allows you to run the command with the privileges of the superuser and will install the package for the global, system-wide Python installation. Ideally, you should create a virtual environment for the project you are working on. Have a look at this

Regarding the python Try running pip as an executable like this:

python3.6 -m pip install <package>

I also had the same problem, I tried many different command lines, this one worked for me:

Try:

    conda install py-xgboost

That’s what I got:

Collecting package metadata: done
Solving environment: done

## Package Plan ##

  environment location: /home/simplonco/anaconda3

  added / updated specs:
    - py-xgboost


The following packages will be downloaded:

    package                    |            build
    ---------------------------|-----------------
    _py-xgboost-mutex-2.0      |            cpu_0           9 KB
    ca-certificates-2019.1.23  |                0         126 KB
    certifi-2018.11.29         |           py37_0         146 KB
    conda-4.6.2                |           py37_0         1.7 MB
    libxgboost-0.80            |       he6710b0_0         3.7 MB
    mkl-2019.1                 |              144       204.6 MB
    mkl_fft-1.0.10             |   py37ha843d7b_0         169 KB
    mkl_random-1.0.2           |   py37hd81dba3_0         405 KB
    numpy-1.15.4               |   py37h7e9f1db_0          47 KB
    numpy-base-1.15.4          |   py37hde5b4d6_0         4.2 MB
    py-xgboost-0.80            |   py37he6710b0_0         1.7 MB
    scikit-learn-0.20.2        |   py37hd81dba3_0         5.7 MB
    scipy-1.2.0                |   py37h7c811a0_0        17.7 MB
    ------------------------------------------------------------
                                           Total:       240.0 MB

The following NEW packages will be INSTALLED:

  _py-xgboost-mutex  pkgs/main/linux-64::_py-xgboost-mutex-2.0-cpu_0
  libxgboost         pkgs/main/linux-64::libxgboost-0.80-he6710b0_0
  py-xgboost         pkgs/main/linux-64::py-xgboost-0.80-py37he6710b0_0

The following packages will be UPDATED:

  ca-certificates     anaconda::ca-certificates-2018.12.5-0 --> pkgs/main::ca-certificates-2019.1.23-0
  mkl                                            2019.0-118 --> 2019.1-144
  mkl_fft                              1.0.4-py37h4414c95_1 --> 1.0.10-py37ha843d7b_0
  mkl_random                           1.0.1-py37h4414c95_1 --> 1.0.2-py37hd81dba3_0
  numpy                               1.15.1-py37h1d66e8a_0 --> 1.15.4-py37h7e9f1db_0
  numpy-base                          1.15.1-py37h81de0dd_0 --> 1.15.4-py37hde5b4d6_0
  scikit-learn                        0.19.2-py37h4989274_0 --> 0.20.2-py37hd81dba3_0
  scipy                                1.1.0-py37hfa4b5c9_1 --> 1.2.0-py37h7c811a0_0

The following packages will be SUPERSEDED by a higher-priority channel:

  certifi                                          anaconda --> pkgs/main
  conda                                            anaconda --> pkgs/main
  openssl                anaconda::openssl-1.1.1-h7b6447c_0 --> pkgs/main::openssl-1.1.1a-h7b6447c_0


Proceed ([y]/n)? y


Downloading and Extracting Packages
libxgboost-0.80      | 3.7 MB    | ##################################### | 100% 
mkl_random-1.0.2     | 405 KB    | ##################################### | 100% 
certifi-2018.11.29   | 146 KB    | ##################################### | 100% 
ca-certificates-2019 | 126 KB    | ##################################### | 100% 
conda-4.6.2          | 1.7 MB    | ##################################### | 100% 
mkl-2019.1           | 204.6 MB  | ##################################### | 100% 
mkl_fft-1.0.10       | 169 KB    | ##################################### | 100% 
numpy-1.15.4         | 47 KB     | ##################################### | 100% 
scipy-1.2.0          | 17.7 MB   | ##################################### | 100% 
scikit-learn-0.20.2  | 5.7 MB    | ##################################### | 100% 
py-xgboost-0.80      | 1.7 MB    | ##################################### | 100% 
_py-xgboost-mutex-2. | 9 KB      | ##################################### | 100% 
numpy-base-1.15.4    | 4.2 MB    | ##################################### | 100% 
Preparing transaction: done
Verifying transaction: done
Executing transaction: done

The answer is in the error message. In the past you or a process did a sudo pip and that caused some of the directories under /Library/Python/2.7/site-packages/... to have permissions higher than current user.

Then you did a pip install whatever which modifies a directory you don’t have write access to.

So to fix it, visit the /Library/Python/2.7/site-packages/... find the directory with the root or elevated permissions and either rm -rf yourpackages then reinstall the packages with your user, or just force ownership there to the user to whom ought to have access using chown -R ... or chmod -R ...

I had the same problem while installing numpy with pip install numpy.

Then I tried

sudo -H pip3 install --upgrade pip

sudo -H pip3 install numpy

It worked well for me.

Explanation :
The -H (HOME) option with sudo sets the HOME environment variable to the home directory of the target user (root by default). By default, sudo does not modify HOME.

I was making the same mistakes then I realized that I have created my virtual environment as root user. It was write protected, so please check whether your virtual environment is write protected. make a new venv and try again

I got the same error when I was trying to install a package (flask-classful).
I made the mistake of installing anaconda as root. I changed the ownership of the installed anaconda folder and I could install the package successfully.

Use the command chown with option -R to recursively change ownership of the installed anaconda folder like so:

chown -R owner:group /path/to/anaconda

Here owner is your username and group is the group name.

This worked for me:

 python3 -m venv env
 source ./env/bin/activate
 python -m pip install package

(From Github: https://github.com/googlesamples/assistant-sdk-python/issues/236 )

try this command line below for MacOS to check user’s permission.

$ sudo python -m pip install --user --upgrade pip

just sudo pip install packagename

I have anaconda installed for Python 3. I also have Python2 in my mac.

python --version

gives me

Python 3.7.3

python2.7 --version

gives me

Python 2.7.10

I wanted to install pyspark package in python2, given that it was already installed in python3.

python2.7 -m pip install pyspark

gives me an error

Could not install packages due to an EnvironmentError: [Errno 13]
Permission denied: ‘/Library/Python/2.7/site-packages/pyspark’
Consider using the --user option or check the permissions.

The below command solved it. Thank god I didn’t have to do any config changes.

python2.7 -m pip install pyspark --user

Collecting pyspark Requirement already satisfied: py4j==0.10.7 in
/Library/Python/2.7/site-packages (from pyspark) (0.10.7) Installing
collected packages: pyspark Successfully installed pyspark-2.4.4 You
are using pip version 18.1, however version 19.3.1 is available. You
should consider upgrading via the ‘pip install –upgrade pip’ command.

For MacOs & Unix

Just by adding sudo to command will work, as it would run it as a superuser.

sudo pip install --upgrade pip

It is advised that you should not directly do it though – please see this post

I already tried all suggestion posted in here, yet I’m still getting the errno 13,

I’m using Windows and my python version is 3.7.3

After 5 hours of trying to solve it, this step worked for me:

I try to open the command prompt by run as administrator

I had similar trouble in a venv on a mounted NTFS partition on linux with all the right permissions.
Making sure pip ran with –ignore-installed solved it, i.e.:

python -m pip install --upgrade --ignore-installed

On Mac, there is no 3.7 directory or the directory 3.7 is owned by root. So, I removed that directory, create a new directory by current user, and move it there. Then installation finishes without error.

sudo rm -rf /Library/Python/3.7
mkdir 3.7
sudo mv 3.7 /Library/Python
ll /Library/Python/
pip3 install numpy

This also happens to me when I try to install the opencv-python package:

I can fix it with command line

python3 -m pip install {name of package} --user

When I try to install the said package, the command becomes:

python3 -m pip install opencv-python --user

Resulting in this:

I was running python3 -m pip install xxx

ERROR: Could not install packages due to an EnvironmentError: [Errno 13] Permission denied: '/Library/Python/3.8'
Consider using the `--user` option or check the permissions.

/Library/Python/3.8 Indicates that python3 I’m using is the system wide python, and hence permission issues. Solutions involving --user flags and virtual envs are all solving this issue.

For me, using brew the most convenient:

brew install [email protected]
brew link [email protected]
which python3

After which python3 -m pip install xxx succeed without problems. Note that sudo should not be used.

The principle is the same: you are starting a new environment that is less privileged. This implies all the packages you need from the old environment need to be installed again in this new environment.

I guess use the --user flag if you don’t want to reinstall everything.

To see if it’s actually a problem with permissions run the following to install a package named xxx.

pip install --user xxx

for eg: to install package bcrypt run,

pip install --user bcrypt

I changed the rights of the venv that I was working in since the permissions were missing in the virtual environment subfolders.

sudo chmod -R a+rwx testenv

Then I could install an automatically recommended package from within codium.