Highlight a node in draw_networkx visualisation without changing node colour

Question

I am using NetworkX to visualise a large graph with > 1000 nodes. As part of that visualisation, I wanted to be able to highlight certain nodes.

I have seen this question and am aware that NetworkX will allow you to highlight a node by changing the node colour like this:

import networkx as nx
import matplotlib.pyplot as plt
edges = [['A','B'], ['A','C'], ['A','D'], ['B','E'], ['B','F'], ['D','G'],['D','H'],['F','I'],['G','J'],['A','K']]
G = nx.Graph()
G.add_edges_from(edges)

colours = ['blue']*5 + ['red'] + ['blue']*5
nx.draw_networkx(G, font_size=16, node_color=colours)
plt.show()

But, with a large number of nodes, I have had to reduce the node size significantly, otherwise it just appears as a blurry cloud of overlapping nodes, so changing the node colour isn’t effective.

What I would ideally like to do is change the label font colour to, say, red for the text label of chosen nodes.Unlike node_color, however, NetworkX only seems to offer a global argument font_color to change the colour for all node labels and it won’t accept, e.g. font_color=colours.

If there any way through NetworkX or Matplotlib to either change the font colour for a specific node/group of nodes, or to add any sort of call-out, or any other way to highlight certain nodes without relying on changing node_color?

Asked By: David Buck

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Source

Answer 1

You can draw a subgraph on top of your original graph:

# generate node positions:
pos = nx.spring_layout(G)

# draw graph
nx.draw_networkx(G, pos=pos, font_size=16, node_color='blue', font_color='white')

# draw subgraph for highlights
nx.draw_networkx(G.subgraph('F'), pos=pos, font_size=16, node_color='red', font_color='green')

Answered By: warped

Answer 2

Another solution:

import networkx as nx
import matplotlib.pyplot as plt

edges = [['A', 'B'], ['A', 'C'], ['A', 'D'], ['B', 'E'], ['B', 'F'],     ['D', 'G'], ['D', 'H'], ['F', 'I'], ['G', 'J'],
     ['A', 'K']]
G = nx.Graph()
G.add_edges_from(edges)

colors = ['red' if node_name == 'F' else 'blue' for node_name in list(G.nodes)]
nx.draw_networkx(G, font_size=16, node_color=colors, with_labels=True)
plt.show()

And if you want to highlight certain nodes with specific names:

import networkx as nx
import matplotlib.pyplot as plt

edges = [['A', 'B'], ['A', 'C'], ['A', 'D'], ['B', 'E'], ['B', 'F'], ['D', 'G'], ['D', 'H'], ['F', 'I'], ['G', 'J'],
     ['A', 'K']]
G = nx.Graph()
G.add_edges_from(edges)

highlight_nodes = ['A', 'F', 'B']
colors = ['red' if node_name in highlight_nodes else 'blue' for node_name in list(G.nodes)]
nx.draw_networkx(G, font_size=16, node_color=colors, with_labels=True)
plt.show()

Also, you can replace list(G.nodes) with one of the following options: G, G.nodes, G.nodes(). All of them will give the same result. The sample output from second code snippet:

Answered By: Dharma

Answer 3

Take a look at this answer. All you need to do is use the attribute color=my_font_color[node] (where my_font_color is a dictionary with the nodes as keys and color names as values) inside plt.text and you can have any font color you want for your nodes. It works!

Answered By: yannis

Highlight a node in draw_networkx visualisation without changing node colour

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