How to zip all outputs (*.csv and *.tiff) in jupyter notebook
Question:
I use this command
! zip -r results.zip . -i *.csv *.pdf
in Jupyter Notebook(Python 3.7.10) in order to zip all the output files. But, it shows
zip’ is not recognized as an internal or external command, operable program or batch file.
Can anyone suggest what I miss?
Answers:
I think you are trying to use,os.system():
If you are using linux
import os
os.system("zip -r results.zip . -i *.csv *.pdf")
#OR
import subprocess
subprocess.Popen("zip -r results.zip . -i *.csv *.pdf")
If you aren’t using linux, in windows. There is library called zipfile, you can use it:
from zipfile import ZipFile
import os
filesname=os.listdir("<path or empty") # Or you can alternately use glob inside `with` ZipFile
# Empty means working folder
with ZipFile('output.zip', 'w') as myzip:
for file in files:
if file.endswith(".csv") and file.endswith(".pdf"):
myzip.write(file)
On modern Windows the Zip tool is Tar
It is not well documented nor as easy to use as most 3rd Party zippers thus you would need to custom wrap your OS call.
generally the following should be good enough
Tar -a -cf results.zip *.csv *.pdf
However if there are not one or other type the response will complete for the valid group, but with a very cryptic response:-
Tar: : Couldn't visit directory: No such file or directory
Tar: Error exit delayed from previous errors.
I use this command
! zip -r results.zip . -i *.csv *.pdf
in Jupyter Notebook(Python 3.7.10) in order to zip all the output files. But, it shows
zip’ is not recognized as an internal or external command, operable program or batch file.
Can anyone suggest what I miss?
I think you are trying to use,os.system():
If you are using linux
import os
os.system("zip -r results.zip . -i *.csv *.pdf")
#OR
import subprocess
subprocess.Popen("zip -r results.zip . -i *.csv *.pdf")
If you aren’t using linux, in windows. There is library called zipfile, you can use it:
from zipfile import ZipFile
import os
filesname=os.listdir("<path or empty") # Or you can alternately use glob inside `with` ZipFile
# Empty means working folder
with ZipFile('output.zip', 'w') as myzip:
for file in files:
if file.endswith(".csv") and file.endswith(".pdf"):
myzip.write(file)
On modern Windows the Zip tool is Tar
It is not well documented nor as easy to use as most 3rd Party zippers thus you would need to custom wrap your OS call.
generally the following should be good enough
Tar -a -cf results.zip *.csv *.pdf
However if there are not one or other type the response will complete for the valid group, but with a very cryptic response:-
Tar: : Couldn't visit directory: No such file or directory
Tar: Error exit delayed from previous errors.