Create all possible combinations of lists of different sizes in numpy

Question

I want to create a numpy array with all possible combinations of items from multiple lists of different sizes:

a = [1, 2] 
b = [3, 4]
c = [5, 6, 7] 
d = [8, 9, 10]

In each combination, I want 2 elements. I don’t want any duplicates, and I don’t want items from the same list to mix together.

I can get all such combinations with 3 elements with np.array(np.meshgrid(a, b, c, d)).T.reshape(-1,3) but I need pairs, not triplets. Doing np.array(np.meshgrid(a, b, c, d)).T.reshape(-1,2) doesn’t work because it just cuts off one column of the original array.

Any ideas on how to achieve this?

Asked By: gimi

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Source

Answer 1

So Itertools is great for this. The first thing you want to do is conjoin your list into a single iterable list (list of lists). The first step is to get all combinations of list.

from itertools import combinations, product

a = [1, 2] 
b = [3, 4]
c = [5, 6, 7] 
d = [8, 9, 10]
total = [a,b,c,d]
for item in combinations(total, 2):
    print(item)

which returns

([1, 2], [3, 4])
([1, 2], [5, 6, 7])
([1, 2], [8, 9, 10])
([3, 4], [5, 6, 7])
([3, 4], [8, 9, 10])
([5, 6, 7], [8, 9, 10])

The you can simply iterate over the individual lists as below

from itertools import combinations

a = [1, 2] 
b = [3, 4]
c = [5, 6, 7] 
d = [8, 9, 10]
total = [a,b,c,d]
for item in combinations(total, 2):
    for sub_item in item[0]:
        for second_sub_item in item[1]:
            print(sub_item, second_sub_item)

print out is

Answered By: Pieter Geelen

Answer 2

Similar to Olvin Roght’s comment, but if you put your sublists in a list you can do:

>>>> ls = [[1,2],[3,4],[5,6,7],[8,9,10]]
>>>> [item for cmb in combinations(ls, 2) for item in product(*cmb)]
[(1, 3), (1, 4), (2, 3), (2, 4), (1, 5), (1, 6), (1, 7), (2, 5), (2, 6), (2, 7), (1, 8), (1, 9), (1, 10), (2, 8), (2, 9), (2, 10), (3, 5), (3, 6), (3, 7), (4, 5), (4, 6), (4, 7), (3, 8), (3, 9), (3, 10), (4, 8), (4, 9), (4, 10), (5, 8), (5, 9), (5, 10), (6, 8), (6, 9), (6, 10), (7, 8), (7, 9), (7, 10)]

Answered By: gimix

Answer 3

Here’s an alternative if you want to use only numpy without using itertools.

def all_combinations(arrays):
    """
    :param arrays: tuple of 1D lists.
        the functions returns the combinations of all these lists.
    :return: np.array of shape (len_out, 2).
        np.array of all the possible combinations.
    """
    len_array = np.asarray([len(elt) for elt in arrays])
    
    # the length of out is equal to the sum of the products 
    # of each element of len_array with another element of len_array
    
    len_out = (np.sum(len_array) ** 2 - np.sum(len_array ** 2)) // 2
    out, next_i = np.empty((len_out, 2), dtype=int), 0
    new_elt = arrays[0]

    for elt in arrays[1:]:
        out_elt = np.asarray(np.meshgrid(new_elt, elt)).T.reshape(-1, 2)
        next_j = next_i + len(out_elt)
        out[next_i: next_j] = out_elt
        next_i = next_j
        new_elt = np.concatenate((new_elt, elt))

    return out

Example:

>>> arrays = ([1, 2], [3, 4], [5, 6, 7], [8, 9, 10])
>>> all_combinations(arrays)
    [[ 1  3]
     [ 1  4]
     [ 2  3]
     ...
     ...
     [ 7  8]
     [ 7  9]
     [ 7 10]]

Answered By: Romain Simon

Create all possible combinations of lists of different sizes in numpy

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