How to output an .nii.gz nifiti image with FastAPI whilst keeping everything on memory? Question: I would like to find a way to send a .nii.gz file from my FastAPI ‘server’ without saving the image, but instead keeping it in the memory. I managed to upload the image like that, but I struggle to do …
Python – Pandas "BadGzipFile" Error When Reading in ".json.gz" File Question: I am trying to read in data from a ".json.gz" file as a dataframe. I keep getting an error indicating that it is a "BadGzipFile". However, when I unzip the file manually (i.e., just double clicking it in my finder), I am able to …
gzip python module is giving empty bytes Question: I copied one .gz file to a remote machine using fabric. When I tried to read the same remote file, empty bytes are getting displayed. Below is the python code I used to read the zip file from remote machine. try: fabric_connection = Connection(host = host_name, connect_kwargs …
How can i open pip file codes to read? Question: I’m trying to check how the (pip black) is written and would love to read its code but having trouble. I downloaded the file from browser but its on gz format and when I try to open it on VSCode I get cryptic lines like …
Loading compressed baboon interaction data in Python Question: I am interested in reading the observational data and wearable sensor data available here into Python. Specifically, I would like to get them into Pandas dataframes, but even getting them into a more familiar form would effectively answer the question. Both files are *.txt.gz files. I have …
Using Gzip in Python3 with Csv Question: The goal is to create python2.7 and >=python3.6 compatible code. This code currently works on python2.7. It creates a GzipFile object and later writes lists to the gzip file. It lastly uploads the gzip file to an s3 bucket. Starting with: data = [ [1, 2, 3], [4, …
Python: How to handle a corrupted gzip file in reading multiple files Question: I am reading a large set of gzip files. When I tried the below code, the process cannot be finished because some of files are corrupted. Python can open those corrupted files, but the process is interrupted due to errors in certain …
Error! blahfile is not UTF-8 encoded. Saving disabled Question: So, I’m trying to write a gzip file, actually from the net, but to simplify I wrote some very basic test. import gzip LINES = [b’I am a test line’ for _ in range(100_000)] f = gzip.open(‘./test.text.gz’, ‘wb’) for line in LINES: f.write(line) f.close() It runs …
Read multi object json gz file from S3 in python Question: I have some files in a S3 bucket and I’m trying to read them in the fastest possible way. The file’s format is gzip and inside it, there is a single multi object json file like this: {“id”:”test1″, “created”:”2020-01-01″, “lastUpdated”:”2020-01-01T00:00:00.000Z”} {“id”:”test2″, “created”:”2020-01-01″, “lastUpdated”:”2020-01-01T00:00:00.000Z”} What …
How to compress data in C# to be decompressed in zlib python Question: I have a python zlib decompressor that takes default parameters as follows, where data is string: import zlib data_decompressed = zlib.decompress(data) But, I don’t know how I can compress a string in c# to be decompressed in python. I’ve tray the next …
