Please explain me why i am getting this error in snakemake? I´ve been strugling for days please advise me on whats going wrong Question: I wrote this pipeline in snakemake to process my fastq files and get the raw counts but for some reason that I don’t understand in the last rule (featurecounts) I get …
Receiving "TypeError: __init__() got an unexpected keyword argument 'basey'" In this tutorial Question: I’ve been trying to run through this tutorial (https://bedapub.github.io/besca/tutorials/scRNAseq_tutorial.html) for the past day and constantly get an error after running this portion: bc.pl.kp_genes(adata, min_genes=min_genes, ax = ax1) The error is the following: Traceback (most recent call last): File "<stdin>", line 1, in …
subsetting anndata on basis of louvain clusters Question: I want to subset anndata on basis of clusters, but i am not able to understand how to do it. I am running scVelo pipeline, and in that i ran tl.louvain function to cluster cells on basis of louvain. I got around 32 clusters, of which cluster …
