suffix-tree

How to call module written with argparse in iPython notebook Question: I am trying to pass BioPython sequences to Ilya Stepanov’s implementation of Ukkonen’s suffix tree algorithm in iPython’s notebook environment. I am stumbling on the argparse component. I have never had to deal directly with argparse before. How can I use this without rewriting …

How to generate suffix trees using a python library? Question: I need python library that can construct suffix trees and especially generalised suffix trees. Could you suggest me some libraries. Thanks. Asked By: ashim || Source Answers: See the following libraries. suffixtree Python-Suffix-Tree SuffixTree SuffixTree (same name different project, supports generalized suffix trees) pysuffix (This …