Pandas read_csv() conditionally skipping header row

Question

I’m trying to read a csv file but my csv files differ. Some have different format and some have other. I’m trying to add controls so that I will not need to edit my code or my input file.

My problem is, some of these csv files have a line of String above the column headers. An example:

Created on 12-11-2018,CryptoDataDownload.com
Date,Symbol,Open,High,Low,Close,Volume From,Volume To
2018-12-11 11-AM,ADABTC,8.6e-06,8.61e-06,8.55e-06,8.57e-06,301141.7,2.59
2018-12-11 10-AM,ADABTC,8.69e-06,8.72e-06,8.6e-06,8.6e-06,236949.63,2.05

If I import this, the delimeter will use the first line and separate the file into two columns as Created on 12-11-2018 and CryptoDataDownload.com.

This is how df.head() looks like:

                        Created on 12-11-2018 CryptoDataDownload.com
Date             Symbol Open     High     Low      Close              Volume From                          Volume To
2018-12-11 11-AM ADABTC 8.6e-06  8.61e-06 8.55e-06 8.57e-06              301141.7                               2.59
2018-12-11 10-AM ADABTC 8.69e-06 8.72e-06 8.6e-06  8.6e-06              236949.63                               2.05
2018-12-11 09-AM ADABTC 8.7e-06  8.7e-06  8.62e-06 8.69e-06             509311.39                               4.41
2018-12-11 08-AM ADABTC 8.69e-06 8.7e-06  8.63e-06 8.7e-06              111367.34                             0.9656

I want to check if this file has this line and skip it if so.

How can I do this?

Asked By: iso_9001_

||

Source

Answer 1

If the headers in your CSV files follow a similar pattern, you can do something simple like sniffing out the first line before determining whether to skip the first row or not.

filename = '/path/to/file.csv'
skiprows = int('Created in' in next(open(filename)))
df = pd.read_csv(filename, skiprows=skiprows)

Good pratice would be to use a context manager, so you could also do this:

filename = '/path/to/file.csv'
skiprows = 0
with open(filename, 'r+') as f:
    for line in f:
        if line.startswith('Created '):
            skiprows = 1
        break
df = pd.read_csv(filename, skiprows=skiprows)

Answered By: cs95

Answer 2

You can skip rows which start with specific character while using ‘comment’ argument in pandas read_csv command. In your case you can skip the lines which starts with “C” using the following code:

filename = '/path/to/file.csv'
pd.read_csv(filename, comment = "C")

Answered By: Ernest S Kirubakaran

Answer 3

It’s work for me:

import os
import requests

CSV_URL = '...'

with open(os.path.split(CSV_URL)[1], 'wb') as f, requests.get(CSV_URL, stream=True) as r:
    lines = 0
    for line in r.iter_lines():
        if lines == 0:
            lines += 1
        else:
            f.write(line+'n'.encode())

For your case:

import os
import requests

CSV_URL = '...'

with open(os.path.split(CSV_URL)[1], 'wb') as f, requests.get(CSV_URL, stream=True) as r:
    for line in r.iter_lines():
        if line[:11] != 'Created on ':
            f.write(line+'n'.encode())

Adapted from: stackoverflow

Answered By: João Flávio Santos

Pandas read_csv() conditionally skipping header row

Question:

Answers: